SNP Profiles of POUND 10 /B   View Data

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 1234567891011121314
_Input profile
CCAGCCTTCTAATTGTCTCCAAGGCCAA
1._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
2._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
7._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
8._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
9._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
10._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
11._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
12._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
13._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
14._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
15._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
16._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
17._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._GC-01-115-6-12
CCAAGGTT__TTTTCCCCAAGGCCGG
19._POUND_10_/B
CCAAGGTT__TTTTCCCCAAGGCCGG
20._GC-01-115-6-12
CCAAGGTTTT_TTTTCCCCAAGGCCGG
21._GC-01-115-6-12
CCAAGGTTTT_TTTTCCCCAAGGCCGG
22._GC-01-115-6-12
CCAAGGTTTT_TTTTCCCCAAGGCCGG
23._GC-08-162-4-05
CCAAGGTTTT_TTTTCCCCAAGGCCGG
24._GC-08-163-4-06
CCAAGGTTTT_TTTTCCCCAAGGCCGG
25._GC-08-163-4-06
CCAAGGTTTT_TTTTCCCCAAGGCCGG
26._POUND_10_/B
CCAAGGTTTT_TTTTCCCCAAGGCCGG
27._POUND_10_/B
CCAAGGTTTT_TTTTCCCCAAGGCCGG
28._POUND_10_/B
CCAAGGTTTT_TTTTCCCCAAGGCCGG
29._POUND_10_/B
CCAAGGTTTT_TTTTCCCCAAGGCCGG
30._POUND_10_/B
CCAAGGTTTT_TTTTCCCCAAGGCCGG
31._POUND_10_/B
CCAAGGTTTT_TTTTCCCCAAGGCCGG
32._POUND_10_/B
CTAGGGCTCTAACCTTCCCTAAAACCAG
33._GC-08-163-4-06
CTAGGGCTCTAACCTTCCCTAAAACCAG
34._RUQ_1618
CCAGGGTTTTCCTTTTCCCCAAGGCCGG
35._POUND_10_/B
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
36._RUQ_1618
_AAGGTT___TT____CCGG
 1516171819202122232425262728
_Input profile
TTAACGCTCTCGGGAACTACGGGGCTAC
1._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
2._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
3._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
4._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
5._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
6._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
7._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
8._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
9._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
10._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
11._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
12._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
13._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
14._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
15._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
16._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
17._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
18._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
19._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
20._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
21._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
22._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
23._GC-08-162-4-05
TTAAGGTTTTCGGGAACCAAGGTTCCCC
24._GC-08-163-4-06
TTAAGGTTTTCGGGAACCAAGGTTCCCC
25._GC-08-163-4-06
TTAAGGTTTTCGGGAACCAAGGTTCCCC
26._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
27._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
28._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
29._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
30._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
31._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
32._POUND_10_/B
CTATCGCTCCCGGGAGTTAACGGTCTCC
33._GC-08-163-4-06
CTATCGCTCCCGGGAGTTAACGGTCTCC
34._RUQ_1618
TTAAGGTTTTCGGGAACCAAGGTTCCCC
35._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
36._RUQ_1618
____TTCGGG_CCAAGGTTCCCC
 293031323334353637383940  
_Input profile
AGGGAACTAGCCCCCTGTACATGGX_XX_X
1._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
2._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
3._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
4._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
5._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
6._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
7._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
8._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
9._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
10._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
11._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
12._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
13._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
14._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
15._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
16._POUND_10_/B
AGGG_CTAGCCCCCTGTACATGGX_XX_X
17._GC-08-162-4-05
AGGG_CTAGCCCCCTGTACATGGX_XX_X
18._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
19._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
20._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
21._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
22._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
23._GC-08-162-4-05
AAGGAACCGGCCAACCGGAATTGGX_XX_X
24._GC-08-163-4-06
AAGGAACCGGCCAACCGGAATTGGX_XX_X
25._GC-08-163-4-06
AAGGAACCGGCCAACCGGAATTGGX_XX_X
26._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
27._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
28._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
29._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
30._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
31._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
32._POUND_10_/B
AAGGAACCAACCACCTGTCCATCGX_XX_X
33._GC-08-163-4-06
AAGGAACCAACCACCTGTCCATCGX_XX_X
34._RUQ_1618
AAGGAACCGGCCAACCGGAATTGGX_XX_X
35._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
36._RUQ_1618
AA_AACCGGCCAACCGGAA__X_XX_X

Input profile: POUND_10_/B

 
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Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

1._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

3._POUND_10_/B GC-01-115-6-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

4._POUND_10_/B GC-01-115-6-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

7._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._POUND_10_/B GC-08-162-4-05

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

13._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

14._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

15._POUND_10_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

16._POUND_10_/B

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

17._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._POUND_10_/B GC-01-115-6-12

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._POUND_10_/B

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

21._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

22._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._POUND_10_/B GC-08-163-4-06

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._POUND_10_/B GC-08-163-4-06

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._POUND_10_/B

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

27._POUND_10_/B

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

28._POUND_10_/B

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

29._POUND_10_/B

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

30._POUND_10_/B

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

31._POUND_10_/B

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

32._POUND_10_/B

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8406 7
 Dapeng Zhang, 2016

33._POUND_10_/B GC-08-163-4-06

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._POUND_10_/B RUQ_1618

66.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

35._POUND_10_/B

65 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

36._POUND_10_/B RUQ_1618

56.3 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25